Madison Avenue Presbyterian Church in New York City, NY, where Thompson pastored before taking over as the leader of the Presbyterian Board of Home Missions at the turn of the 20th century.
The Great Presbyterian Conflict: Patton vs. Swing (1874)
Times of Refreshing: A History of American Revivals from 1740-1877, With Their Philosophy and Methods (1877)
Etchings in Verse (1890)
The Presbyterians (1903)
The Religious Foundations of America (1917)
The Soul of America: The Contribution of Presbyterian Home Missions (1919)