Samuel Miles Hopkins, II is buried at Fort Hill Cemetery, Auburn, New York.
Protestantism in the Middle of the Nineteenth Century: Inaugural Address of Samuel M. Hopkins, Professor of Church History, &c., Auburn Theological Seminary (1849)
The Period From the War of the Revolution to the Adoption of Measures For the Organization of the General Assembly, 1775-1786 (1876)
Opening of the Synod of Dort (1878)
Manual of Church Polity (1878)
The Presbyterian Cultus (1882)
A General Liturgy and Book of Common Prayer (1883)
Sketch of the Public and Private Life of Samuel Miles Hopkins, of Salem, Connecticut, Written by Himself, and Left as a Token of Affection to His Children. Together With Reminiscences by His Children, and a Genealogy of the Hopkins Family (1898)
Samuel Miles Hopkins, D.D.: A Memorial Address by Rev. Edward D. Morris, D.D., LL.D., Delivered at Auburn Seminary, May Fifth, 1902 (1902, 1913)
A Short History of American Presbyterianism From Its Foundations to the Reunion of 1869 (1903)
