Thomas Murphy is buried at Blawenburg Cemetery, Blawenburg, Somserset, New Jersey .
One Hundred Years of the Presbyterian Church of Frankford (1872)
Pastoral Theology (1877)
Duties of the Church Member to the Church (1878)
People and Pastor: Duties Involved in the Important Relation (1887)
The Presbytery of the Log College; or, The Cradle of the Presbyterian Church in America (1889)
The Message to the Seven Churches of Asia (1895)